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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7178230_7179725_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7178230 - 7179725
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TCTTTCTTACCA
Flanking Amino Acid:
KQRRPLTECRNKPCGHPGDT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
83.5
0.75
0.8
77.9
35.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
70.6
0.64
1.6
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019231
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047333
7174270 - 7183992
9723