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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_718641_718726_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
718641 - 718726
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
GTTTCATGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCAATGTTAACT
Flanking Amino Acid:
CLKKRPRKQHAKKSEKSKEQ
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.5
0.57
1
69.2
40.9
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
49.3
0.03
2.1
65.79
44.5

Associated Gene:

Gene:
BRDT
Ensembl Gene ID:
ENSAPLG00000014456
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015077
705153 - 730839
25687