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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_718841_720594_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
718841 - 720594
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGGTTCTGAATT
Flanking Amino Acid:
QLNLKKGNCKFESNAESGIG
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
61.5
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88
0.85
0.7
85.6
29.1
Minor 5ss
38.6
-1.3
3.3
51
45.9
Minor BPS
59.8
0.39
1.4
70.07
40.9

Associated Gene:

Gene:
BRDT
Ensembl Gene ID:
ENSAPLG00000014456
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015077
705153 - 730839
25687