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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_721634_722826_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
721634 - 722826
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
AATCTCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATTACTTCAATC
Flanking Amino Acid:
NCPISMEQPQKIPLGLQKMP
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
76.8
0.6
0.9
66.7
39.6
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
60.8
0.32
1.5
69.82
35.6

Associated Gene:

Gene:
BRDT
Ensembl Gene ID:
ENSAPLG00000014456
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015077
705153 - 730839
25687