About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7243537_7248072_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7243537 - 7248072
Intron Length:
4536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
TLLLSYLSYKGNIWEQILRI
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
81
0.7
1
82.8
26.1
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985