About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7248708_7249327_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7248708 - 7249327
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCCATTAATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTCCATTAATG
Flanking Amino Acid:
LAKHALENMINDLHRAIQRT
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
67.6
0.4
0.9
62.9
37.3
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
68.2
0.43
1.7
74.4
37.5

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985