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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_727618_727985_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
727618 - 727985
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TAAATAACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAACT
Flanking Amino Acid:
ETKFQFSPGKDTGIKNIDSW
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66
0.36
1
60.8
44.3
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
60
0.39
2.1
87.86
36.4

Associated Gene:

Gene:
BRDT
Ensembl Gene ID:
ENSAPLG00000014456
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015077
705153 - 730839
25687