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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7297605_7298698_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7297605 - 7298698
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TGGTATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAATT
Flanking Amino Acid:
QLTGTKQTLSRESPQSSEQW
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.5
0.55
1
70.6
44.1
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
62.8
0.48
1.6
78.42
39.1

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000028023
7197052 - 7334894
137843