About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7298849_7300009_F

Intron Information:

Intron Rank:
17
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
7298849 - 7300009
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTCTAATTAAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCTTTTCTAATT
Flanking Amino Acid:
FTYASFHAHKKFGVCLIGVR
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.2
37
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.4
0.5
1.1
77.4
34.9
Minor 5ss
76.5
0.89
2
81.9
31.2
Minor BPS
56
0.27
1.7
71.16
41

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000028023
7197052 - 7334894
137843