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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7301799_7303151_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7301799 - 7303151
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TCTACTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTTTCTACTC
Flanking Amino Acid:
PSDDEVSAGLEYAKGYPPYS
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
71.9
39.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
72.2
0.5
0.8
70.1
30.6
Minor 5ss
39.5
-1.2
3
47.1
42.6
Minor BPS
51.3
0.02
1.9
69.85
36.3

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000028023
7197052 - 7334894
137843