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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7303258_7305754_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7303258 - 7305754
Intron Length:
2497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
VPFCCLRLDKGCQHNYYEDA
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.5
36.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.7
0.62
0.9
75.2
39
Minor 5ss
29.1
-2.4
3.4
38.8
46.3
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985