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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7305928_7310836_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7305928 - 7310836
Intron Length:
4909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTATGTAGA
5'SS Class:
weak_major
3'SS Sequence:
CTCTACACAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTACAC
U12 Branch Point Sequence:
TCTTTCTCTACA
Flanking Amino Acid:
LNPIVLLLDNPLDDLLRCGV
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.4
61.9
44.2
Major BPS
60.3
0.26
1.1
68.9
36.5
Major PPT
53.8
0.09
1.1
53.9
34
Minor 5ss
43
-0.8
2.5
55
42.6
Minor BPS
56.8
0.21
1.9
71.02
41

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985