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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7326529_7327815_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7326529 - 7327815
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTGC
5'SS Class:
major
3'SS Sequence:
AAAAATCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TCCTGCTAAAAA
Flanking Amino Acid:
ISMLDTLLYQSFVKDYMISI
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
59.4
40.4
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
64.5
0.33
1.1
55.5
44.2
Minor 5ss
43.2
-0.7
3.1
59.3
45.4
Minor BPS
47.4
-0.2
2.2
59.76
46.2

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985