About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7326529_7329120_F


Intron Information:

Intron Rank:
24

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7326529 - 7329120

Intron Length:
2592

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATTGTGC

5'SS Class:
major

3'SS Sequence:
ATTGTTTGTTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ACTTAAA

U12 Branch Point Sequence:
ATGACTTAAAGT

Flanking Amino Acid:
ISMLDTLLYQMKITEEDLWI

Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.4
0.48
1.1
59.4
40.4

Major BPS
69
0.47
1
69.9
32.6

Major PPT
79.2
0.66
1
77.4
41.2

Minor 5ss
43.2
-0.7
3.1
59.3
45.4

Minor BPS
48.4
-0
2
66.41
44.6

Associated Gene:

Gene:
KCNT2

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7197052 - 7339036
141985