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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7329250_7331701_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7329250 - 7331701
Intron Length:
2452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCCCCACCC
Flanking Amino Acid:
TESQKLTTSESRETASQSQI
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.6
0.62
1
77.3
35.9
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
48.1
-0.1
2.1
69.49
41.6

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985