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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7331723_7333105_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7331723 - 7333105
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACCCCTTAATG
Flanking Amino Acid:
TSESRETASQSQISISVEEW
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
1
71.9
33.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
65.1
0.33
1.4
60.61
41.2

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000028023
7197052 - 7334894
137843
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985