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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7333407_7336544_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7333407 - 7336544
Intron Length:
3138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATTA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTCTAATGAATT
Flanking Amino Acid:
KHLGLSPAGYDEMNDHQNTL
Intron Amino Acid Position:
1086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.2
33.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
82
0.72
0.8
74.6
36.4
Minor 5ss
47.8
-0.2
2.8
61.4
45.4
Minor BPS
48.4
-0
1.9
68.16
42.3

Associated Gene:

Gene:
KCNT2
Ensembl Gene ID:
ENSAPLG00000010501
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010989
7197052 - 7339036
141985
ENSAPLT00000045819
7197052 - 7339036
141985
ENSAPLT00000040222
7197052 - 7339036
141985
ENSAPLT00000027518
7197052 - 7339036
141985
ENSAPLT00000020355
7197052 - 7339036
141985
ENSAPLT00000046270
7197052 - 7339036
141985