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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_737393_739803_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
737393 - 739803
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGCT
5'SS Class:
major
3'SS Sequence:
TCTTTCGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CCGCACTAAAAA
Flanking Amino Acid:
LGTHCYVRIKDSGLRFHYVA
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.9
35.6
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
80.6
0.69
0.8
73.3
37.2
Minor 5ss
25.8
-2.8
3.5
38.5
46.7
Minor BPS
43
-0.5
1.9
46.63
42.8

Associated Gene:

Gene:
EPHX4
Ensembl Gene ID:
ENSAPLG00000014785
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015408
737123 - 752687
15565