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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_739890_743314_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
739890 - 743314
Intron Length:
3425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAACTC
5'SS Class:
major
3'SS Sequence:
TCTCCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTGACCTTATAA
Flanking Amino Acid:
MLLLHGFPEFWYSWRHQLRE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
64.9
39.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
75.4
0.57
0.9
76.7
32
Minor 5ss
36
-1.6
3.3
48.1
42.1
Minor BPS
58.1
0.25
1.8
69.59
42.3

Associated Gene:

Gene:
EPHX4
Ensembl Gene ID:
ENSAPLG00000014785
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015408
737123 - 752687
15565