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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7400274_7427468_R

Intron Information:

Intron Rank:
136664
Intron Class:
major
Intron Phase:
Intron Coordinates:
7400274 - 7427468
Intron Length:
27195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGACATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCTGCTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
76.7
0.6
0.9
70
40.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
68.6
0.58
1.4
73.66
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020975
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020963
7400098 - 7501296
101199