About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7427612_7500969_R

Intron Information:

Intron Rank:
136665
Intron Class:
major
Intron Phase:
Intron Coordinates:
7427612 - 7500969
Intron Length:
73358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TTTGGGTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
66.4
0.41
1
61.3
37
Major PPT
86.1
0.81
0.6
84.9
22.6
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
41.8
-0.5
2.6
68.4
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020975
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043077
7427239 - 7501146
73908
ENSAPLT00000026529
7427522 - 7501999
74478
ENSAPLT00000020963
7400098 - 7501296
101199