About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_749334_751741_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
749334 - 751741
Intron Length:
2408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
GPINHYRNIFSCLPLQHHEV
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.2
81.5
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
31.7
-2.1
3.1
40.9
45.4
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
EPHX4
Ensembl Gene ID:
ENSAPLG00000014785
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015408
737123 - 752687
15565