Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7501147_7501836_R

Intron Information:

Intron Rank:

136668

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7501147 - 7501836

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCTGGGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTACAC

U12 Branch Point Sequence:

GTCTCTGGGAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

26.3

Major BPS

55.1

0.13

1.2

66.7

Major PPT

56.6

0.15

1.2

59.9

40.7

Minor 5ss

36.1

-1.6

3.3

49.4

41.3

Minor BPS

39.9

-0.9

2.1

44.58

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020975

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026529

7427522 - 7501999

74478