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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_753120_753227_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
753120 - 753227
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGCG
5'SS Class:
major
3'SS Sequence:
TGTGCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGGTAC
U12 Branch Point Sequence:
GGTACCGGTACC
Flanking Amino Acid:
LAEQLRRDVGRLLAEGTRCD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
42.7
Major BPS
40.2
-0.6
1.3
28.8
33.7
Major PPT
72.6
0.51
0.9
66.1
35.8
Minor 5ss
29.8
-2.3
3.4
38
47.1
Minor BPS
41.7
-0.6
2.3
54.2
42.9

Associated Gene:

Gene:
BTBD8
Ensembl Gene ID:
ENSAPLG00000014887
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015518
753010 - 786511
33502