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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7570424_7586810_F

Intron Information:

Intron Rank:
125709
Intron Class:
major
Intron Phase:
Intron Coordinates:
7570424 - 7586810
Intron Length:
16387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTATCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATCTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.9
0.81
0.7
81.1
30.7
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
54.8
0.01
1.8
65.11
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017705
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022705
7569467 - 7593460
23994