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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7586932_7660909_R

Intron Information:

Intron Rank:
132335
Intron Class:
major
Intron Phase:
Intron Coordinates:
7586932 - 7660909
Intron Length:
73978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GCAAACTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
57.3
0.31
1.6
67.65
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018448
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031249
7571365 - 7661304
89940