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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7592597_7596307_F

Intron Information:

Intron Rank:
125715
Intron Class:
major
Intron Phase:
Intron Coordinates:
7592597 - 7596307
Intron Length:
3711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGAGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTCATTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.5
0.48
1
64
41.3
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
49.8
0.07
1.7
71.65
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017705
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043594
7586744 - 7596763
10020