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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_769545_769754_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
769545 - 769754
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
GVESLYAACMKWVGKHFAKC
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.7
0.85
0.8
85.4
27.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
BTBD8
Ensembl Gene ID:
ENSAPLG00000014887
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017880
753010 - 786511
33502
ENSAPLT00000015518
753010 - 786511
33502