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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7804730_7806748_F

Intron Information:

Intron Rank:
125107
Intron Class:
major
Intron Phase:
Intron Coordinates:
7804730 - 7806748
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCGATATTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
78.8
38.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
46.1
-0.4
3.1
65.4
39.5
Minor BPS
49.6
-0
1.7
59.48
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017379
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031469
7804001 - 7807086
3086