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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7920619_7935506_R

Intron Information:

Intron Rank:
137390
Intron Class:
major
Intron Phase:
Intron Coordinates:
7920619 - 7935506
Intron Length:
14888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCACTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGTCTCCTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
78.3
0.64
0.8
71.8
32.7
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
51
0.03
1.6
65
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021414
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022426
7916998 - 7935726
18729