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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_7922130_7935506_R

Intron Information:

Intron Rank:
137392
Intron Class:
major
Intron Phase:
Intron Coordinates:
7922130 - 7935506
Intron Length:
13377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATATCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
77.9
0.63
0.9
73.9
40.1
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
50.2
0.08
1.7
70.57
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021414
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023667
7916998 - 7935726
18729