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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_799138_810366_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
799138 - 810366
Intron Length:
11229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGTGATTTAAAA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
49.9
-0
1.7
60.83
38.8

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027550
798921 - 832747
33827