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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_808308_809998_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
808308 - 809998
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATAACCTCAATT
Flanking Amino Acid:
EWNIMFRIQRRFLGSNLRII
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.9
0.65
1
73.8
40.8
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
63.5
0.5
1.6
76.9
39.3

Associated Gene:

Gene:
C1orf146
Ensembl Gene ID:
ENSAPLG00000014919
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015539
802232 - 816423
14192