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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_810078_811462_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
810078 - 811462
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTTACCTACTT
Flanking Amino Acid:
TVKLMLTIAKMTSKPCADAI
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.7
0.56
1
79.3
26.6
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
49
0.01
2.1
74.6
42

Associated Gene:

Gene:
C1orf146
Ensembl Gene ID:
ENSAPLG00000014919
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015539
802232 - 816423
14192