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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_810460_811437_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
810460 - 811437
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TAAAAATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CATCATTTAAAA
Flanking Amino Acid:
SHLRGKKNITSNQIFQIAIL
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.1
35.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
64.4
0.32
1
55.2
44.1
Minor 5ss
36.3
-1.5
3
45
37.2
Minor BPS
51.2
0.03
1.6
60.45
38.9

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032637
809960 - 832747
22788
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040809
808364 - 832747
24384