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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8112486_8113733_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8112486 - 8113733
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
TTTATCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCT
Flanking Amino Acid:
VFLRFWETLDRYMVKHKSHL
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.2
0.66
1
83.5
31.7
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
67.7
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659