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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_811553_812853_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
811553 - 812853
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GGTATTCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGTGAATTAATT
Flanking Amino Acid:
PAMTTEMQLQHLPNWTVFHY
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
62.3
0.28
1.1
61
40.4
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
49.9
0.07
1.9
69.57
41.1

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032637
809960 - 832747
22788
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040809
808364 - 832747
24384