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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8119086_8126142_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8119086 - 8126142
Intron Length:
7057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTC
Flanking Amino Acid:
LNAKDLLQDLKFVPSDEKKK
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.1
0.52
1
71.9
38.2
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
67.2
0.52
1.5
74.74
36.3

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659