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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8126231_8126543_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8126231 - 8126543
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TATAACTTGATT
Flanking Amino Acid:
QARPPPNQKKGSRTPIIIIP
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
1.1
79.1
36.4
Major BPS
69.1
0.48
1
70
32.1
Major PPT
87
0.83
0.7
81.2
30.2
Minor 5ss
32.2
-2
2.8
41.7
44.8
Minor BPS
62.7
0.48
1.5
78.02
38

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659