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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8126580_8129466_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8126580 - 8129466
Intron Length:
2887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTATATTATGT
Flanking Amino Acid:
TPAAQPVPRPVSQARPPPNQ
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
41.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
45.3
-0.2
2.1
66.27
44

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659