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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8129525_8179193_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8129525 - 8179193
Intron Length:
49669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTAATGTTACCT
Flanking Amino Acid:
YHGMTLKSVTEGASARKTQT
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.5
36.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.7
0.51
1
74
34.5
Minor 5ss
43.6
-0.7
2.9
56.2
48
Minor BPS
48.2
-0
2.3
72.89
43.9

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659