About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8198291_8200526_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8198291 - 8200526
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTTGCTCATTT
Flanking Amino Acid:
KEGIVQTEQIRSLSEAMSVE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.2
0.59
0.9
74.8
35.2
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
52.3
0.15
2.2
79.99
42.5

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659