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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8200616_8202300_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8200616 - 8202300
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTACTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
AAAAATTTAAGC
Flanking Amino Acid:
LAEAKKPRIEDEECVRLDKE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.2
35.8
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
70.6
0.46
0.9
62.7
38.7
Minor 5ss
32.6
-2
3.1
41.2
44.8
Minor BPS
46.8
-0.2
1.8
52.79
37.9

Associated Gene:

Gene:
CDC73
Ensembl Gene ID:
ENSAPLG00000003506
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003587
8112449 - 8208107
95659