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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8219828_8221153_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8219828 - 8221153
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAAAA
Flanking Amino Acid:
PATALREYREKMGIPAKLIV
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.4
0.64
0.8
70.5
36.3
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
64.5
0.45
1.5
74.4
36.4

Associated Gene:

Gene:
RO60
Ensembl Gene ID:
ENSAPLG00000003121
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003187
8219675 - 8225664
5990