About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8221301_8221703_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8221301 - 8221703
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTCCTTTTAAG
Flanking Amino Acid:
LPQVLVKMYEIPMGTTDCSL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
82.5
0.73
0.9
87.3
23.7
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
55
0.01
1.8
66.22
41.2

Associated Gene:

Gene:
RO60
Ensembl Gene ID:
ENSAPLG00000003121
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003187
8219675 - 8225664
5990