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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8222678_8223013_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8222678 - 8223013
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACT
Flanking Amino Acid:
LDASFYKTFKTIDPTGKRFL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.5
37.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
32.9
-2
2.9
40
45.6
Minor BPS
89.7
1.32
0.8
98.16
24.3

Associated Gene:

Gene:
RO60
Ensembl Gene ID:
ENSAPLG00000003121
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003187
8219675 - 8225664
5990