Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8223152_8223917_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8223152 - 8223917

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

TACTTCGTAAAA

Flanking Amino Acid:

RLRNEKLLKKGRIHPFHILV

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

79.5

0.66

0.8

74.4

35.8

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

50.5

0.01

2.1

65.11

41.3

Associated Gene:

Gene:

RO60

Ensembl Gene ID:

ENSAPLG00000003121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003187

8219675 - 8225664

5990