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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8224065_8224327_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8224065 - 8224327
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CCTTCTTTGATC
Flanking Amino Acid:
LLTNHLKSKEVWKALLKDMP
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.3
0.55
0.9
69.2
35.7
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
67.6
0.54
1.2
68.56
38.2

Associated Gene:

Gene:
RO60
Ensembl Gene ID:
ENSAPLG00000003121
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003187
8219675 - 8225664
5990