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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8230876_8231322_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8230876 - 8231322
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
CTTTCCTTATTC
Flanking Amino Acid:
GVFTELIKGFGCRGAQVEEI
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
65.7
35.6
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
86
0.81
0.8
85.1
28.4
Minor 5ss
23.6
-3
3.3
28.9
43.6
Minor BPS
71.4
0.65
1.6
77.93
38.5

Associated Gene:

Gene:
UCHL5
Ensembl Gene ID:
ENSAPLG00000002704
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002768
8230319 - 8247409
17091