About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8231387_8233359_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8231387 - 8233359
Intron Length:
1973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTC
Flanking Amino Acid:
SLEPENFEKLKPVHGLIFLF
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
34.3
-1.8
3.2
43.3
38.2
Minor BPS
60.6
0.31
1.5
68.94
37.7

Associated Gene:

Gene:
UCHL5
Ensembl Gene ID:
ENSAPLG00000002704
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002768
8230319 - 8247409
17091